PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G193500.1
Common NameB456_001G193500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 93aa    MW: 10897.8 Da    PI: 10.0823
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G193500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-0944851055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        + RR++i +++  L++l+P +    +k  +Ka +L + ++Y++sLq
  Gorai.001G193500.1 44 KVRREKISERMKYLQDLVPGC----NKITDKAGMLNEIINYVQSLQ 85
                        78*******************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000255.9E-11245IPR006689Small GTPase superfamily, ARF/SAR type
Gene3DG3DSA:3.40.50.3001.7E-5240IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003288.4E-14731IPR006689Small GTPase superfamily, ARF/SAR type
PRINTSPR003288.4E-143459IPR006689Small GTPase superfamily, ARF/SAR type
PROSITE profilePS5088813.1863484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-143590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-54090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-134190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-74389No hitNo description
PfamPF000109.4E-74485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005525Molecular FunctionGTP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
RLAQHQPTQY PTLEELSIGM IKFKAFDLGC HQIARRVWKD YYAKVRREKI SERMKYLQDL  60
VPGCNKITDK AGMLNEIINY VQSLQRQVEV KK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5852767e-66JX585276.1 Gossypium hirsutum clone NBRI_GE18804 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486176.12e-64PREDICTED: GTP-binding protein SAR1-like
SwissprotP528858e-25SAR1_TOBAC; GTP-binding protein SAR1
TrEMBLA0A0D2Q1383e-64A0A0D2Q138_G
STRINGPP1S7_338V6.17e-23(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16325314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.13e-24cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]